Large Language Models (LLMs) have demonstrated remarkable capabilities in many real-world applications.

Large Language Models (LLMs) often produce inconsistent answers when faced with different phrasings of the same prompt. In this paper, we propose Flip-Flop Consistency ($F^2C$), an unsupervised training method that improves robustness to such perturbations. $F^2C$ is composed of two key components. The first, Consensus Cross-Entropy (CCE), uses a majority vote across prompt variations to create a hard pseudo-label. The second is a representation alignment loss that pulls lower-confidence and non-majority predictors toward the consensus established by high-confidence, majority-voting variations. We evaluate our method on 11 datasets spanning four NLP tasks, with 4-15 prompt variations per dataset. On average, $F^2C$ raises observed agreement by 11.62%, improves mean $F_1$ by 8.94%, and reduces performance variance across formats by 3.29%. In out-of-domain evaluations, $F^2C$ generalizes effectively, increasing $\overline{F_1}$ and agreement while decreasing variance across most source-target pairs. Finally, when trained on only a subset of prompt perturbations and evaluated on held-out formats, $F^2C$ consistently improves both performance and agreement while reducing variance. These findings highlight $F^2C$ as an effective unsupervised method for enhancing LLM consistency, performance, and generalization under prompt perturbations. Code is available at https://github.com/ParsaHejabi/Flip-Flop-Consistency-Unsupervised-Training-for-Robustness-to-Prompt-Perturbations-in-LLMs.

Early and accurate diagnosis of Alzheimer's disease (AD), a complex neurodegenerative disorder, requires analysis of heterogeneous biomarkers (e.g., neuroimaging, genetic risk factors, cognitive tests, and cerebrospinal fluid proteins) typically represented in a tabular format. With flexible few-shot reasoning, multimodal integration, and natural-language-based interpretability, large language models (LLMs) offer unprecedented opportunities for prediction with structured biomedical data. We propose a novel framework called TAP-GPT, Tabular Alzheimer's Prediction GPT, that adapts TableGPT2, a multimodal tabular-specialized LLM originally developed for business intelligence tasks, for AD diagnosis using structured biomarker data with small sample sizes. Our approach constructs few-shot tabular prompts using in-context learning examples from structured biomedical data and finetunes TableGPT2 using the parameter-efficient qLoRA adaption for a clinical binary classification task of AD or cognitively normal (CN). The TAP-GPT framework harnesses the powerful tabular understanding ability of TableGPT2 and the encoded prior knowledge of LLMs to outperform more advanced general-purpose LLMs and a tabular foundation model (TFM) developed for prediction tasks. To our knowledge, this is the first application of LLMs to the prediction task using tabular biomarker data, paving the way for future LLM-driven multi-agent frameworks in biomedical informatics.

Large Language Models (LLMs) have demonstrated remarkable capabilities in many real-world applications.

Evaluating LLMs with a single prompt has proven unreliable, with small changes leading to significant performance differences. However, generating the prompt variations needed for a more robust multi-prompt evaluation is challenging, limiting its adoption in practice. To address this, we introduce PromptSuite, a framework that enables the automatic generation of various prompts. PromptSuite is flexible - working out of the box on a wide range of tasks and benchmarks. It follows a modular prompt design, allowing controlled perturbations to each component, and is extensible, supporting the addition of new components and perturbation types. Through a series of case studies, we show that PromptSuite provides meaningful variations to support strong evaluation practices. All resources, including the Python API, source code, user-friendly web interface, and demonstration video, are available at: https://eliyahabba.github.io/PromptSuite/.

Evaluations of large language models (LLMs) suffer from instability, where small changes of random factors such as few-shot examples can lead to drastic fluctuations of scores and even model rankings. Moreover, different LLMs can have different preferences for a certain setting of random factors. As a result, using a fixed setting of random factors, which is often adopted as the paradigm of current evaluations, can lead to potential unfair comparisons between LLMs. To mitigate the volatility of evaluations, we first theoretically analyze the sources of variance induced by changes in random factors. Targeting these specific sources, we then propose the instance-level randomization (ILR) method to reduce variance and enhance fairness in model comparisons. Instead of using a fixed setting across the whole benchmark in a single experiment, we randomize all factors that affect evaluation scores for every single instance, run multiple experiments and report the averaged score. Theoretical analyses and empirical results demonstrate that ILR can reduce the variance and unfair comparisons caused by random factors, as well as achieve similar robustness level with less than half computational cost compared with previous methods.

Large language models (LLMs) are often used for infilling tasks, which involve predicting or generating missing information in a given text. These tasks typically require multiple interactions with similar context. To reduce the computation of repeated historical tokens, cross-request key-value (KV) cache reuse, a technique that stores and reuses intermediate computations, has become a crucial method in multi-round interactive services. However, in infilling tasks, the KV cache reuse is often hindered by the structure of the prompt format, which typically consists of a prefix and suffix relative to the insertion point. Specifically, the KV cache of the prefix or suffix part is frequently invalidated as the other part (suffix or prefix) is incrementally generated. To address the issue, we propose EFIM, a transformed prompt format of FIM to unleash the performance potential of KV cache reuse. Although the transformed prompt can solve the inefficiency, it exposes subtoken generation problems in current LLMs, where they have difficulty generating partial words accurately. Therefore, we introduce a fragment tokeniza-tion training method which splits text into multiple fragments before tokenization during data processing. Experiments on two representative LLMs show that LLM serving with EFIM can lower the latency by 52% and improve the throughput by 98% while maintaining the original infilling capability.

Instruction-tuned large language models (LLMs) employ structured templates, such as role markers and special tokens, to enforce format consistency during inference. However, we identify a critical limitation of such formatting: it induces a phenomenon we term diversity collapse, where the model generates semantically similar outputs for open-ended inputs, undermining creativity and variability. We systematically evaluate this effect across tasks like story completion and free-form generation, finding that (1) diversity collapse persists even under high-temperature sampling, and (2) structural tokens in templates significantly constrain the model's output space. To contextualize these findings, we fine-tune the same model using a range of structured prompts and then evaluate them across three axes: downstream task performance, alignment behavior, and output diversity. Our analysis shows that format consistency between fine-tuning and inference is crucial for structure-sensitive tasks (e.g., GSM8K, IFEval), but has marginal influence on knowledge-heavy tasks (e.g., MMLU, WebQuestions). In contrast, output diversity is primarily governed by the presence or absence of structural tokens, with minimal formatting yielding the most diverse outputs. These findings reveal that current prompting conventions, while beneficial for alignment, may inadvertently suppress output diversity, underscoring the need for diversity-aware prompt design and instruction tuning.

Mechanistic interpretability aims to understand the inner workings of large neural networks by identifying circuits, or minimal subgraphs within the model that implement algorithms responsible for performing specific tasks. These circuits are typically discovered and analyzed using a narrowly defined prompt format. However, given the abilities of large language models (LLMs) to generalize across various prompt formats for the same task, it remains unclear how well these circuits generalize. For instance, it is unclear whether the models generalization results from reusing the same circuit components, the components behaving differently, or the use of entirely different components. In this paper, we investigate the generality of the indirect object identification (IOI) circuit in GPT-2 small, which is well-studied and believed to implement a simple, interpretable algorithm. We evaluate its performance on prompt variants that challenge the assumptions of this algorithm. Our findings reveal that the circuit generalizes surprisingly well, reusing all of its components and mechanisms while only adding additional input edges. Notably, the circuit generalizes even to prompt variants where the original algorithm should fail; we discover a mechanism that explains this which we term S2 Hacking. Our findings indicate that circuits within LLMs may be more flexible and general than previously recognized, underscoring the importance of studying circuit generalization to better understand the broader capabilities of these models.

Several recent works seek to develop foundation models specifically for medical applications, adapting general-purpose large language models (LLMs) and vision-language models (VLMs) via continued pretraining on publicly available biomedical corpora. These works typically claim that such domain-adaptive pretraining (DAPT) improves performance on downstream medical tasks, such as answering medical licensing exam questions. In this paper, we compare seven public "medical" LLMs and two VLMs against their corresponding base models, arriving at a different conclusion: all medical VLMs and nearly all medical LLMs fail to consistently improve over their base models in the zero-/few-shot prompting regime for medical question-answering (QA) tasks. For instance, across the tasks and model pairs we consider in the 3-shot setting, medical LLMs only outperform their base models in 12.1% of cases, reach a (statistical) tie in 49.8% of cases, and are significantly worse than their base models in the remaining 38.2% of cases. Our conclusions are based on (i) comparing each medical model head-to-head, directly against the corresponding base model; (ii) optimizing the prompts for each model separately; and (iii) accounting for statistical uncertainty in comparisons. While these basic practices are not consistently adopted in the literature, our ablations show that they substantially impact conclusions. Our findings suggest that state-of-the-art general-domain models may already exhibit strong medical knowledge and reasoning capabilities, and offer recommendations to strengthen the conclusions of future studies.